
Molecular Models in .pdb format.
Dr Dave Woodcock
Chemistry Department
Okanagan University College
Kelowna, British Columbia, Canada.
Copyright, 1996, Dave Woodcock
Structures now catalogued with Chemfinder
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Cyclic: Non-Aromatic
I. Monocyclic Alkanes
Note:
This listing includes molecules with more than one ring where the rings
have no common carbon. Find these molecules under the smaller ring.
Bicyclic and unsaturated compounds listed separately below.
C-3 Ring
- (3R)-3-Cyclobutyl-1-cyclopropylpentane: pdb
- Cyclopropane: pdb
- Cyclopropoxycyclohexane : pdb
- Cis-1,2-Dimethylcyclopropane : pdb
- (3R)-3-Cyclopropyl-4,4-dimethyloctane : pdb
- trans-1-Cyclopropyl-3-fluorocyclobutane : pdb
- (2R,3S)-Dicyclopropylpentane (meso) : pdb
- 1,3-Dicyclopropylpropan-2-one : pdb
- trans-1-Isopropy-2-methylcyclopropane : pdb
- Tetracyclopropylmethane : pdb
- trans-1,2-Dimethylcyclopropane : pdb
C-4 Ring
- Cyclobutane: pdb
- Cyclobutanone : pdb
- cis-1,2-Diethylcyclobutane : pdb
- trans-1,3-Diisopropylcyclobutane : pdb
- trans-1,2-Diethylcyclobutane : pdb
- cyclobutylcyclopentane : pdb
- Dicyclobutylmethane : pdb
- Ethylcyclobutane : pdb
- trans-1-Ethyl-2-methylcyclobutane : pdb
C-5 Ring
- trans-2-Bromocyclopentanol : pdb
- cis-2-Chlorocyclopent-1-yl 2-ethylbutanoate : pdb
- (2R)-2-cyclobutylpentane : pdb
- Cyclopentanamine : pdb
- Cyclopentane: pdb
- Cyclopentanol : pdb
- Cyclopentanone : pdb
- (4S)-4-Cyclopentyloctane: pdb
- Diethylcyclopentane : pdb
- 1,1-Difluorocyclopentane : pdb
- trans-1,2-Diiodocyclopentane : pdb
- cis-1,2-Diiodocyclopentane : pdb
- trans-1,2-Dimethoxycyclopentane : pdb
- cis-1,3-Dimethylcyclopentane : pdb
- cis-1,2-Dimethylcyclopentane : pdb
- trans-1,2-Dimethylcyclopentane : pdb
- trans-1,3-Dimethylcyclopentane : pdb
- (S)-2,2-Dimethylcyclopentan-2-ol : pdb
- (R)-2,2-Dimethylcyclopentan-2-ol : pdb
- trans-1-Ethyl-2-methylcyclopentane : pdb
- trans-1-Ethyl-2-methylcyclopentane: pdb
- Methylcyclopentane : pdb
- (1R,2S,4S)-1,2,4-Triethylcyclopentane (all cis) : pdb
C-6 Ring
- Bromocyclohexane : pdb
shown in chair conformation with bromine equatorial
- (R)-2-Cyanocyclohexanone : pdb
- Cyclohexane, boat conformation : pdb
- Cyclohexane, chair conformation : pdb
- C6H12O2 : trans-cyclohexane-1,4-diol : pdb
(chair, diequatorial)
- Cyclohexane-1,4-dione : pdb
- cis-Cyclohexane-1,2-diol : pdb
- Cyclohexanol : pdb
- Cyclohexene : pdb
- Cyclohexanone : pdb
- Cyclohexyl ethanoate (chair, axial) : pdb
- 1-Cyclohexylpentan-1-one : pdb
- cis-1,2-Diethylcyclohexane: pdb
- trans-1,3-Diethylcyclohexane : pdb
- trans-1-t-Butyl-2-methylcyclohexane : pdb
- trans-1,2-Dimethylcyclohexane (diequatorial): pdb
- trans-1,2-Dimethylcyclohexane (diaxial) : pdb
- cis-1,2-Dimethylcyclohexane : pdb
- t-Butylcyclohexane : pdb
- t-Butylcyclohexane : pdb
- (1S,2S,4R)-1,2-Dibromo-4-t-butylcyclohexane : pdb
- trans-1-Iodo-2-methylcyclohexane : pdb
shown in chair, diequatorial conformation. Stereochemistry is (1R,2R).
- trans-1-Iodo-2-methylcyclohexane : pdb
shown in chair, diequatorial conformation. Stereochemistry is (1S,2S).
- 1,1-Dimethylcyclohexane : pdb
- (4R)-3-Ethyl-4-cyclopentylhexane : pdb
- 3-Methylcyclohexene : pdb
- Propoxycyclohexane : pdb
- Propylcyclohexane (equatorial, chair) : pdb
C-7 Ring
- cycloheptane : pdb
- Cycloheptanone : pdb
- C9H18 : trans-1,2-Dimethylcycloheptane : pdb
- Fluorocycloheptane : pdb
C-8 Ring
- cyclooctane : pdb
- (E)-Cyclooctene : pdb
-trans-cyclooctene is the smallest trans ring alkene that
can be isolated and stored. It is about 39 kJ/mol higher in
energy than the cis ring alkene.
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II. Spiroalkanes.
- (R)-2-Chlorospiro[4.5]decane : pdb
- (S)-2-Chlorospiro[4.5]decane : pdb
- C(R)-1-Chlorospiro[4.4]nonane : pdb
- (S)-1-Chlorospiro[4.4]nonane : pdb
- 5-Methylspiro[3.4]octane: pdb
- Spiro[4.5]decan-2-one : pdb
- Spiro[3.5]nonane : pdb
- Spiro[2.6]nonane: pdb
- Spiro[3.4]nonane : pdb
- Spiro[5.5]nonane: pdb
- Spiro[4.5]nonane : pdb
- 2,6-Dimethylspiro[4.5]decane: pdb
- 1,2,4,8-Tetramethylspiro[2.5]octane : pdb
- 2,6-Dimethylspiro[3.3]heptane: pdb
- Spiro[3.8]dodecane : pdb
- 2,7-Diethylspiro[5.6]dodecane : pdb
- 8-Isopropylspiro{4.5]decane : pdb
- Spiro[3.3]heptane : pdb
- Spiro[2.7]decane: pdb
- Spiro[4,4]nonane : pdb
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III. Bicyclic Alkanes
- 2-Methylbicyclo[2.1.0]pentane : pdb
- Bicyclo[2.1.1]hexane : pdb
- 1,4-Dimethylbicyclo[2.2.0]hexane : pdb
- Norbornane, bicyclo[2,2,1]heptane : pdb
- 7,7-Dimethylbicyclo[2.2.1]heptane : pdb
- endo-2-Isopropyl-7,7-dimethylbicyclo[2.2.1]heptane : pdb
- trans-Bicyclo[4.4.0]decan-3-one : pdb
- Bicyclo[2.2.2]octane : pdb
- 1,4-Diisopropylbicyclo[2.2.2]octane : pdb
- (2S,3S)-2-Ethyl-3-methylbicyclo[2.2.2]octane : pdb
- Bicyclo[3.1.0]hexane : pdb
- 2,6,6-Trimethylbicyclo[3.1.1]heptane : pdb
- Bicyclo[3.2.0]heptane : pdb
- Bicyclo[3.2.2]nonane : pdb
- Bicyclo[3,3,0]octane : pdb
- 1,2-Dimethylbicyclo[3.3.0]octane : pdb
- Bicyclo[3.3.3]undecane : pdb
- Bicyclo[4.1.0]heptane : pdb
- (1S,2R,4S,6R)-4-Ethyl-2-isopropylbicyclo[4.1.0]heptane : pdb
- cis-Bicyclo[4.2.1]nonane : pdb
- 1,9-Dimethylbicyclo[4.2.1]nonane : pdb
pinane
- trans-1,6-Dibromobicyclo[4,3,0]nonane : pdb
- 1-Methyl-8-propylbicyclo[4.3.0]nonane : pdb
- Bicyclo[4.3.2]undecane : pdb
- cis-Bicyclo[4.4.0]decane (cis-Decalin) : pdb
- trans-Bicyclo[4.4.0]decane (trans-Decalin) : pdb
- trans-Bicyclo[4.4.0]decan-3-one : pdb
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IV. Alkanes with More than Two Rings
- Adamantane : pdb
- Cubane : pdb
- Quadricyclene : pdb
tetracyclo[2.2.1.0(2,6).0(3,5)]heptane
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V. Unsaturated Rings
- Cyclopentene : pdb
- Cyclononyne : pdb
the smallest ring to contain a C,C triple bond. Is the molecule linear at the triple bond?
- (E)-Cyclooctene : pdb
optically active alkene!
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All versions of Molecular Models in .pdb Form, including all molecular
model coordinate files (the .pdb files) are copyright 1996 by Dave Woodcock,
Department of Chemistry, Okanagan University College, BC, Canada.
If this site is not at www.sci.ouc.bc.ca note that it may be incomplete.
The current version of this document is available
from Chem at OUC
.
page upkeep by Dave Woodcock:
(woodcock@okanagan.bc.ca)
who is solely responsible for the contents.